1. Ding YD, Chang JW, Guo J, Chen DJ, Li S, Xu Q, Deng XX, Cheng YJ*, Chen LL*. Prediction and functional analysis of sweet orange protein-protein interaction network. BMC Plant Biology, 2014, online.(共同通訊作者)
2. Wang JQ, Hao HH, Liu RS, Xu J, Chen F, Cheng YJ*, Deng XX. Comparative analysis of surface wax in mature fruits between satsuma mandarin (Citrus unshiu) and ‘Newhall’ navel orange(Citrus sinensis) from the perspective of crystal morphology, chemical composition and key gene expression. FOOD CHEMISTRY. 2014, 153, 177-185. (通訊作者)
3. Ma QL, Ding YD, Chang JW, Sun XH, Zhang L, Wei QJ, Cheng YJ*, Chen LL, Xu J and Deng XX. Comprehensive insights on how 2,4-dichlorophenoxyacetic acid retards senescence in post-harvest citrus fruits using transcriptomic and proteomic approaches. JOURNAL OF EXPERIMENTAL BOTANY, 2014, 65 (1): 61-74 (通訊作者)
4. Sun XH, Zhu AD, Liu SZ, Sheng L, Ma QL, Zhang L, Nishawy EME, Zeng Y, Xu J, Ma ZC, Cheng YJ?, Deng XX. Integration of metabolomics and subcellular organelle expression micro increases understanding of the organic acid changes in post-harvest Citrus fruit. JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2013,55 (11): 1038–1053 (通訊作者)
5. Yun Z, Gao HJ, Liu P, Liu SZ, Jin S, Xu Q, Xu J, Cheng Y*, Deng XX. Comparative proteomic and metabolomic profiling of citrus fruit with enhancement of disease resistance by postharvest heat treatment. BMC PLANT BIOLOGY, 2013,13: 44 (通訊作者)
6. Yun Z, Jin S, Ding YD, Wang Z, Gao HJ, Pan ZY, Xu J, Cheng YJ*, Deng XX. Comparative transcriptomics and proteomics analysis of citrus fruit, to improve understanding of the effect of low temperature on maintaining fruit quality during lengthy post-harvest storage. JOURNAL OF EXPERIMENTAL BOTANY, 2012, 63: 2873-2893(通訊作者)
7. Sun XH, Xiong JJ, Zhu AD, Zhang L, Ma QL, Xu J, Cheng YJ*, Deng XX. Sugars and organic acids changes in pericarp and endocarp tissues of pumelo fruit during postharvest storage. SCIENTIA HORTICULTURAE, 2012, 142: 112-117(通訊作者)
8. Zhu AD, Li WY, Ye JL, Sun XH, Ding YD, Cheng YJ*, Deng XX, Micro expression profiling of postharvest ponkan mandarin (Citrus reticulata) fruit under cold storage reveals regulatory gene candidates and implications on soluble sugars metabolism. JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2011, 53: 358-374(通訊作者)
9. Zhang R, Zhu AD, Wang XJ, Yu J, Zhang HR, Gao JS, Cheng YJ*, Deng XX. Development of Juglans Regia SSR markers by data mining of the EST database. PLANT MOLECULAR BIOLOGY REPORTER, 2010, 28: 646-653(通訊作者)
10. Yun Z, Li WY, Pan ZY, Xu J, Cheng YJ, Deng XX. Comparative proteomics analysis of differentially accumulated proteins in juice sacs of ponkan (Citrus reticulate) fruit during postharvest cold storage. POSTHARVEST BIOLOGY AND TECHNOLOGY, 2010, 56: 189-201(通訊作者)
13. Cheng YJ. Guo WW. Deng XX. Inter-generic mitochondrial genome recombination in somatic hybrids between Citrus and Poncirus. JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY, 2007, 82: 849-854.
14. Cheng YJ, Meng HJ, Guo WW, Deng XX. Universal chloroplast primer pairs for Simple Sequence Repeat analysis in diverse genera of fruit crops. JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY, 2006, 81, 132-138.
15. Cheng YJ, De Vicente MC, Meng HJ, Guo WW, Tao NG, Deng XX. A set of primers for analyzing chloroplast DNA diversity in Citrus and related genera. TREE PHYSIOLOGY, 2005, 25: 661-672.
16. Cheng YJ, Guo WW, Deng XX. cpSSR: A new tool to analyze chloroplast genome of Citrus somatic hybrids. ACTA BOTANICA SINICA, 2003, 45: 906-909.
17. Cheng YJ, Guo WW, Deng XX. Molecular characterization of cytoplasmic and nuclear genomes in phenotypically abnormal Valencia orange (Citrus sinensis) plus Meiwa kumquat (Fortunella crassifolia) intergeneric somatic hybrids. PLANT CELL REPORTS,2003, 21: 445-451
18. Yang SZ, Peng LT, Cheng YJ, Chen F, Pan SY. Control of citrus green and blue molds by Chinese propolis. FOOD SCIENCE AND BIOTECHNOLOGY, 2010, 19: 1303-1308
19. Biswas MK, Baig MNR, Cheng YJ, Deng XX. Retro-transposon based genetic similarity within the genus Citrus and its relatives. GENETIC RESOURCES AND CROP EVOLUTION, 2010, 57: 963-972
20. Liu HM, Guo JH, Cheng YJ, Liu P, Long CA, Deng BX. Inhibitory activity of tea polyphenol and Hanseniaspora uvarum against Botrytis cinerea infections. LETTERS IN APPLIED MICROBIOLOGY, 2010, 51: 258-263
21. Liu HM, Guo JH, Cheng YJ, Luo L, Liu P, Wang BQ, Deng BX, Long CA. Control of gray mold of grape by Hanseniaspora uvarum and its effects on postharvest quality parameters. 2010, 60: 31-35
22. Liu HM, Guo JH, Luo L, Liu P, Wang BQ, Cheng YJ, Deng BX, Long CA. Improvement of Hanseniaspora uvarum biocontrol activity against gray mold by the addition of ammonium molybdate and the possible mechanisms involved. CROP PROTECTION, 2010, 29: 277-282
23. Liu HM, Guo JH, Liu P, Cheng YJ, Wang BQ, Long CA, Deng BX. Inhibitory activity of tea polyphenol and Candida ernobii against Diplodia natalensis infections. JOURNAL OF APPLIED MICROBIOLOGY. 2010, 108: 1066-1072
24. Liu P, Luo L, Guo JH, Liu HM, Wang BQ, Deng BX, Long CA, Cheng YJ. Farnesol induces apoptosis and oxidative stress in the fungal pathogen Penicillium expansum. MYCOLOGIA, 2010, 102: 311-318
25. Ding J, Deng XX, Zhang HY, Cheng YJ, Xu Q, Liu Q. Somaclonal variation with early juice-sac granulation obtained by inter-specific protoplast fusion in citrus. JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY, 2009, 84: 567-573
26. Liu CH, Jiang D, Cheng YJ, Deng XX, Chen F, Fang F, Ma ZH, Xu J*, Chemotaxonomic study of Citrus, Poncirus and Fortunella genotypes based on peel oil volatile compounds -deciphering the genetic origin of mangshanyegan (Citrus nobilis Lauriro). PLOS ONE, 2013,8(3), e58411
27. Xu Q, Chen LL, Ruan XA, Chen DJ, Zhu AD, Chen CL, Bertrand D, Jiao WB, Hao BH, Lyon MP, Chen JJ, Gao S, Xing F, Lan H, Chang JW, Ge XH, Lei Y, Hu Q, Miao Y, Wang L, Xiao SX, Biswas MK, Zeng WF, Guo F, Cao HB, Yang XM, Xu XW, Cheng YJ, Xu J, Liu JH, Luo OJ, Tang ZH, Guo WW, Kuang HH, Zhang HY, Roose ML, Nagarajan N, Deng XX, Ruan YJ. The draft genome of sweet orange (Citrus sinensis). NATURE GENETICS, 2013, 45: 59-U92
28. Peng LT, Yang SZ, Cheng YJ, Chen F, Pan SY, Fan G. Antifungal activity and action mode of pinocembrin from propolis against Penicillium italicum. FOOD SCIENCE AND BIOTECHNOLOGY, 2012, 21: 1533-1539
29. Tao NG, Wang CF, Xu J, Cheng YJ. Carotenoid accumulation in postharvest “Cara Cara” navel orange (Citrus sinensis Osbeck) fruits stored at different temperatures was transcriptionally regulated in a tissue-dependent manner. PLANT CELL REPORTS, 2012, 31: 1667-1676
30. Liu CH, Cheng YJ, Zhang HY, Deng XX, Chen F, Xu J. Volatile constituents of wild citrus Mangshanyegan (Citrus nobilis Lauriro) peel oil. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2012, 60: 2617-2628
31. Yang SZ, Peng LT, Su XJ, Chen F, Cheng YJ, Fan G, Pan SY. Bioassay-guided isolation and identification of antifungal components from propolis against Penicillium italicum. FOOD CHEMISTRY, 2011, 127: 210-215
32. Liu P, Guo JH, Liu HM, Cheng YJ, Wang BQ, Long CA, Deng BX. Diallyl trisulfide (DATS) effectively induced apoptosis of postharvest disease Penicillium expansum of citrus. ANNALS OF MICROBIOLOGY, 2009, 59: 675-679
33. Guo WW, Wu RC, Fan GE, Cheng YJ. Analysis of mitochondrial genomes in Citrus interspecific somatic hybrids produced by protoplast fusion. BOTANICAL STUDIES. 2008, 49: 295-300
34. Guo WW, Wu RC, Cheng YJ, Deng XX. Regeneration and molecular characterisation of two interspecific somatic hybrids of Citrus for potential rootstock improvement. JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY, 2008, 83: 407-410
35. Thao NG, Hu ZY, Liu Q, Xu J, Cheng YJ, Guo LL, Guo WW, Deng XX. Expression of phytoene synthase gene (Psy) is enhanced during fruit ripening of Cara Cara navel orange (Citrus sinensis Osbeck). PLANT CELL REPORTS, 2007, 26: 837-843
36. Guo WW, Wu RC, Cheng YJ, Deng XX. Production and molecular characterization of Citrus intergeneric somatic hybrids between red tangerine and citrange. PLANT BREEDING. 2007, 126: 72-76
37. Tao NG, Wei J, Liu YZ, Cheng YJ, Deng XX. Copia-like retrotransposons in a precocious mutant of trifoliate orange [Poncirus trifoliata (L.) Raf]. JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY, 2006, 81: 1038-1042
38. Li YZ, Cheng YJ, Yi HL, Deng XX. Genetic diversity in mandarin landraces and wild mandarins from China based on nuclear and chloroplast simple sequence repeat markers. JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY, 2006, 81: 371-378
39. Guo WW, Cheng YJ, Chen CL, Deng XX. Molecular analysis revealed autotetraploid, diploid and tetraploid cybrid plants regenerated from an interspecific somatic fusion in Citrus. SCIENTIA HORTICULTURAE, 2006, 108: 162-166
40. Tao NG, Xu J, Cheng YJ, Deng XX. Construction and characterization of a cDNA library from the pulp of Cara Cara navel orange (Citrus sinensis Osbeck). JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 48, 315-319
41. Tao NG, Xu J, Cheng YJ, Hong L, Guo WW, Yi HL, Deng XX. Isolation and characterization of Copia-like retrotransposons from 12 sweet orange (Citrus sinensis Osbeck) cultivars. JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2005, 47: 1507-1515
42. Tao NG, Xu J, Cheng YJ, Deng XX. Lycopene-epsilon-cyclase pre-mRNA is alternatively spliced in Cara Cara navel orange (Citrus sinensis Osbeck). BIOTECHNOLOGY LETTERS, 2005, 27: 779-782
43. Hao YJ, Cheng YJ, Deng XX. Stable maintenance and expression of a foreign gene in transgenic pear shoots retrieved from in vitro conservation. JOURNAL OF PLANT PHYSIOLOGY, 2005, 162: 237-243
44. Guo WW, Prasad D, Cheng YJ, Serrano P, Deng XX, Grosser JW. Targeted cybridization in citrus: transfer of Satsuma cytoplasm to seedy cultivars for potential seedlessness. PLANT CELL REPORTS, 2004, 22: 752-758
45. Hao YJ, Cheng YJ, Deng XX. GUS gene remains stable in transgenic Citrus callus recovered from cryopreservation. CRYOLETTERS, 2003, 24: 375-380
46. Liu JH, Pang XM, Cheng YJ, Meng HJ, Deng XX. Molecular characterization of the nuclear and cytoplasmic genomes of intergeneric diploid plants from cell fusion between Microcitrus papuana and Rough lemon. PLANT CELL REPORTS, 2002, 21: 327-332
47. Guo WW, Cheng YJ, Deng XX. Regeneration and molecular characterization of intergeneric somatic hybrids between Citrus reticulata and Poncirus trifoliate. PLANT CELL REPORTS, 2002, 20: 829-834.